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- Archana Malhotra@archana
Archana Malhotra commented on a bookmark List of popular bioinformatics software/tools 4844 days ago

This wikipedia page also list good, and useful software for bioinformatics analysis work. Link @ http://en.wikipedia.org/wiki/List_of_open-source_bioinformatics_software
- Jitendra Narayan@admin
Jitendra Narayan bookmarked List of popular bioinformatics software/tools 4844 days ago

In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.

http://samtools.sourceforge.net/swlist.shtml
Comments
- Priya Singh@priyasingh
  
  Priya Singh 3934 days ago
  PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms.
  Relying on unique software architecture, PLAST takes full advantage of recent multi-core personal computers without requiring any additional hardware devices.
  More at https://plast.inria.fr/
- Rahul Nayak@rahul
  
  Rahul Nayak 3908 days ago
  Mapping single molecule sequencing reads using Basic Local Alignment with Successive Refinement (BLASR) http://bix.ucsd.edu/projects/blasr/
- Jit@jit.aber
  
  Jit 3896 days ago
  MEDIPS: genome-wide dierential coverage analysis of sequencing
  MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments https://www.bioconductor.org/packages/3.3/bioc/vignettes/MEDIPS/inst/doc/MEDIPS.pdf
+25 more
- Jitendra Narayan@admin
Jitendra Narayan published a news post Try R Online in the group R and Bioconductor 4844 days ago

Interactive online R tutorial
Comments
- Archana Malhotra@archana
  
  Archana Malhotra 4843 days ago
  Highly aprreciated news Jitendra. This R tutorial is really good. It does not require any prior R knowledge and also keep user away from installation and configuration hassle.
  Thanks once again.
  Like :)
- Jitendra Narayan@admin
Jitendra Narayan created a page Phylogenetic for Bioinformatics 4844 days ago

Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence from morphological, biochemical, and gene sequence data suggests that all organisms on Earth are genetically related, and the genealogical...
Comments
- Jit@jit.aber
  
  Jit 1489 days ago
  Nice tutorial https://www.zoology.ubc.ca/~bio336/Bio336/Lectures/Lecture14/Overheads.html
- Jit@jit.aber
  
  Jit 1488 days ago
  Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf
- Jitendra Narayan@admin
Jitendra Narayan created a page Bioinformatics Algorithms 4844 days ago

An algorithm is a computable set of steps to achieve a desired result. We use algorithms every day. For example, a recipe for baking a cake is an algorithm. Most programs, with the exception of some artificial intelligence applications, consist of...
Comments
- Manshi Raghubanshi@dreamgirl
  
  Manshi Raghubanshi 4810 days ago
  Wow, look like very informative page. My fab. HMM for bioinformatics presentaion page http://users-cs.au.dk/cstorm/courses/PRiB_f12/slides/hmm-bioinf.pdf
- Manisha Mishra@manisha
  
  Manisha Mishra 4724 days ago
  You can find several bioinformatics algorithm bookmarks @ http://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials
- Jitendra Prajapati@jprajapati81
  
  Jitendra Prajapati 4070 days ago
  Sequence alignment algorithms http://www.math.utep.edu/Faculty/mleung/bioinformatics/chap0602.pdf
+3 more
- Jitendra Narayan@admin
Jitendra Narayan created a page Data Mining in Bioinformatics 4844 days ago

Data mining, the extraction of hidden predictive information from large databases. Data mining is becoming an increasingly important tool to transform this data into information. It is commonly used in a wide range of profiling practices, such as...
- Jit@jit.aber
Jit posted a new ad in the Opportunity Researcher in computer science/biology 4845 days ago
- Jit@jit.aber
Jit posted a new ad in the ResearchLabs Welch Lab 4845 days ago
- Archana Malhotra@archana
Archana Malhotra answered the question Is there any quick way to check the installed Perl modules from Linux/Unix command line. 4845 days ago

Hi Neelam, If you would like to just check the specific module installed in your system, try this perl -M<Module_name> -le 'print 1' For example : To check Regexp::Common perl -MRegexp::Common -le 'print 1' If you get...
- Jitendra Narayan@admin
Jitendra Narayan answered the question Is there any quick way to check the installed Perl modules from Linux/Unix command line. 4845 days ago

You can try this: perl -MFile::Find=find -MFile::Spec::Functions -Tlw -e 'find { wanted => sub { print canonpath $_ if /\.pm\z/ }, no_chdir => 1 }, @INC' In above Perl Oneliner File::Find and File::Spec::Functions module are used to list...
- Jitendra Prajapati@jprajapati81
Jitendra Prajapati answered the question Is there any quick way to check the installed Perl modules from Linux/Unix command line. 4845 days ago

Hey !! There is a Perl module ExtUtils::Installed for this kind of job. You should install it from cpan.my $Inst = ExtUtils::Installed->new();my @Modules = $Inst->modules();print "Current List of Installed PERL Modules:\n\n";foreach my...
- Neel@neelam
Neel asked Is there any quick way to check the installed Perl modules from Linux/Unix command line. 4845 days ago

We always need to keep track of all the Perl modules, and install new one if required. Generally, whenever we run the Perl script it flash error message with the name of module not installed. I would like to know the quicker way to check the...
- Jitendra Narayan@admin
Jitendra Narayan created a page Bioinformatics Definitions 4845 days ago

"Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "The mathematical, statistical and computing methods that aim to solve biological problems using DNA and amino acid sequences and related...
Comments
- Shruti Paniwala@shruti
  
  Shruti Paniwala 4653 days ago
  The definition of bioinformatics with new twist ... they exlain with venn diagram. http://blog.fejes.ca/?p=2418
- Jit@jit.aber
  
  Jit 4435 days ago
  A review on bioinformatics http://www.ebi.ac.uk/luscombe/docs/imia_review.pdf explain it with an ease.
- Jit@jit.aber
  
  Jit 3749 days ago
  Computing Biology et al @ http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005050
+5 more
- Jitendra Narayan@admin
Jitendra Narayan created a page BioRuby :Ruby packages for biologist 4845 days ago

BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides an integrated environment in bioinformatics for the Ruby...
- Jitendra Narayan@admin
Jitendra Narayan created a page Ruby Language 4845 days ago

Ruby was created by Yukihiro Matsumoto, who wished to create a new language that balanced functional programming with imperative programming Ruby is a dynamic, reflective, general purpose object-oriented programming language that combines syntax...
- priyojit mangan@sanahal
priyojit mangan is now a friend with Jitendra Narayan 4845 days ago
priyojit mangan@sanahal
Jitendra Narayan@admin
- Jitendra Narayan@admin
Jitendra Narayan is now a friend with priyojit mangan 4845 days ago
Jitendra Narayan@admin
priyojit mangan@sanahal
- Archana Malhotra@archana
Archana Malhotra is now a friend with priyojit mangan 4845 days ago
Archana Malhotra@archana
priyojit mangan@sanahal
- priyojit mangan@sanahal
priyojit mangan is now a friend with Archana Malhotra 4845 days ago
priyojit mangan@sanahal
Archana Malhotra@archana
- Neel@neelam
Neel commented on an answer to a question 4846 days ago

Knowing a little of everything is often better than having one expert skill. Learn as much as you can. Learn new bioinformatics tools, techniques, complex biological rules, programming logics .. etc.

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