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Here are the following steps I suggest: 1) map the reads on the contigs in order to determine the average coverage (and see whether 25% of the reads is an amount too low or actually OK in view of assembler/MIRA requirements.2) plot the histogram of...

DESCHRAMBLER is shown to produce highly accurate reconstructions using data simulation and by benchmarking it against other reconstruction tools You can find the detail of reconstructed data at http://bioinfo.konkuk.ac.kr/DESCHRAMBLER/

CoreTracker detects evidences of codon reassignment from the protein repertoire of a set of genomes by successively applying different algorithms. It’s a filtering approach that explore all possible reassignments in every genomes from the...

I assembled the genome, by fragmenting(split) the read data in TWO set. After assembling both sets, I am just wondering what to do the next? How to validate? Is that everything is going alright? I only use QUAST and it seems OK to me. Any other...

Bioinformatics is the application of information technology to the study of living things, usually at the molecular level. Bioinformatics involves the use of computers to collect, organize and use biological information to answer questions in fields...

Learning resources http://archive.ics.uci.edu/ml/index.php #Learn #MAchine #Learning #AI #UCI

Perl basics http://perldoc.perl.org/perlrequick.html #Perl #quick

Bioinformatics scientist opening at http://www.ccmb.res.in/positions/regular/notif_2_2017/CSIR-CCMB_sci_advt_02_2017.pdf #Bioinformatics #Scientist #CCMB

WalkIn at JIPMER http://jipmer.edu.in/wp-content/uploads/2017/06/Multicentric-Recruitment-on-website.pdf #WalkIn #JIPMER

The Charm City Circleator--or Circleator for short--is a Perl-based visualization tool developed at the Institute for Genome Sciences in the University of Maryland's School of Medicine. Circleator produces circular plots of...

The AnnotationSketch module is a versatile and efficient C-based drawing library for GFF3-compatible genomic annotations. It is included in the GenomeTools distribution. Additionally, bindings to...

BioPerl modules Bio::Graphics + Bio::DB:GFF and example scripts. It can draw some of the (but not all) feature types GBrowse can draw. This script should contain everything you can probably make use of (e.g. transcripts,...

Remove four beginning characters from each line of the file. $ sed 's/^....//' genbank.txt #Remove #Sed #Text

Understanding #K-mean #clustering in #Hindi https://www.youtube.com/watch?v=YWgcKSa_2ag

Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious errors, which limit the usefulness and reliability of these particular protein structures.eQuant is a service for structure...