BOL

I usually report and estimate the genome size by looking into file size of the contigs. Is this right way? 

I had some problem with it as well. It work only on Ubuntu v12.

use File::Basename; use lib dirname (__FILE__); # To search lib in local folder #Perl #Modules

Data structure with R http://staff.washington.edu/jon/dsa-perl/dsa-perl.html #R #Data #Structure #Script #Perl

Interesting PPT on cancer genomics https://www.genome.gov/multimedia/slides/genomicsinmedicine2013-2014/helman_6-7-2013.pdf

Metazoan genome assembly pipeline https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5100563/

DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies Our work is published in Scientific Reports: Ye, C. et al. DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous...

ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial...

Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical steps of metagenome assembly and binning. The Tutorial Data Set FastQC Quality Control Assembly Velvet Assembly MEGAHIT...