BOL

Bioinformatics trainee-ship http://www.nabi.res.in/Vacancies/NABI/Training/2016/JAN-JUNE/TraineesAdvtJan2016.pdf #Trainee #Mohali #NABI

The eFORGE tool provides a method to view the tissue specific regulatory component of a set of EWAS DMPs. eFORGE analysis takes a set of DMPs, such as those hits above genome-wide significance threshold in an EWAS study, and analyses whether there...

Seven Bridges is the biomedical data analysis company accelerating breakthroughs in genomics research for cancer, drug development and precision medicine. We build self-improving systems to analyze millions of genomes, including the Graph...

This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's Laboratory of Biological Modeling, the Purcell Lab at Mount Sinai...

IMPUTE2 is a computer program for phasing observed genotypes and imputing missing genotypes. Most people use just a couple of the program's basic functions, but we have also built up a collection of specialized and powerful options. If you are...

Beagle is a software package that performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Beagle version 4.1 has a more accurate genotype phasing algorithm and a very fast and...

Slice on the fly with perl: my ($username, $real_name) = (split /:/, $str)[0, 4]; #Perl #PerlTrick #Split

Re-install perl in Ubuntu: sudo aptitude reinstall perl #Perl #Ubuntu #Install #Linux

Extract a fasta sequence from multifasta file: samtools faidx multitest.fa and then samtools faidx multitest.fa fasta_id > out.fa #Samtools #Fasta #Extract #Multifasta

List all kernels dpkg --get-selections | grep "linux-image-[[:digit:]].*" | tr "\t" ";" | cut -d ";" -f1 #Kernels #Linux #List

Coverage R Plot http://davetang.org/muse/2013/09/07/creating-a-coverage-plot-in-r/ #R #Plot #Genome #Image #NGS #BAM