BOL

from a Broad Institute site: "N50 is a statistical measure of average length of a set of sequences. It is used widely in genomics, especially in reference to contig or supercontig lengths within a draft assembly. Given a set of sequences of...

I received a new genome to annotated. I need your help to quickly count the occurance of all the letters in fasta file.

Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules:...

#BAM file to #fastaq #conversion with #Samtool: samtools view filename.bam | awk '{OFS="\t"; print "@"$1"\n"$10"\n+\n"$11}' >| filename.fastq

#BAM file to fasta #conversion with #Samtool: samtools view filename.bam | \ awk '{OFS="\t"; print ">"$1"\n"$10}' - > filename.fasta

#Installing #python #pip https://pip.pypa.io/en/stable/installing/

A powerful #multiple #sequence #alignment #browser http://wasabiapp.org/

thank u

GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute), the Data Working Group (DWG) of the Global Alliance brings together the leading Genome Institutes and Centers with IT industry leaders to create global...

To see the read group information for a BAM file, use the following command. samtools view -H sample.bam | grep '@RG' Option Description of AddOrReplaceReadGroups INPUT (String) Input file (BAM or SAM or a GA4GH url). Required.OUTPUT (File)...

i have downloaded sra file and converted into paired end FastQ having following headers: @HWUSI-EAS754_0001:4:1:5605:1034#GCCAT The head and tail of file are as follow Head: ==> ERR042057_1.fastq...

Drag and drop programming language http://snap.berkeley.edu/ #Programming #Language