BOL: All Site Activity

All Site Activity

- Nadia Baig@Nadia
Nadia Baig answered the question how to determine @RG tags from a FastQ header?? 3738 days ago

thank u
- Jitendra Narayan@admin
Jitendra Narayan has a new avatar 3739 days ago
- Jitendra Prajapati@jprajapati81
Jitendra Prajapati bookmarked GA4GH Data Working Group 3739 days ago

GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute), the Data Working Group (DWG) of the Global Alliance brings together the leading Genome Institutes and Centers with IT industry leaders to create global...

http://ga4gh.org/#/
- Jitendra Prajapati@jprajapati81
Jitendra Prajapati answered the question how to determine @RG tags from a FastQ header?? 3739 days ago

To see the read group information for a BAM file, use the following command. samtools view -H sample.bam | grep '@RG' Option Description of AddOrReplaceReadGroups INPUT (String) Input file (BAM or SAM or a GA4GH url). Required.OUTPUT (File)...
- Nadia Baig@Nadia
Nadia Baig asked how to determine @RG tags from a FastQ header?? 3740 days ago

i have downloaded sra file and converted into paired end FastQ having following headers: @HWUSI-EAS754_0001:4:1:5605:1034#GCCAT The head and tail of file are as follow Head: ==> ERR042057_1.fastq...
- Radha Agarkar@radhaagarkar
Radha Agarkar posted a new ad in the Opportunity Post-Doctoral Fellow Jobs opportunity in SRM University 3742 days ago
- Radha Agarkar@radhaagarkar
Radha Agarkar is now a friend with Nabashis Kumar Misra 3742 days ago
Radha Agarkar@radhaagarkar
Nabashis Kumar Misra@nabashismisra
- Nabashis Kumar Misra@nabashismisra
Nabashis Kumar Misra is now a friend with Radha Agarkar 3742 days ago
Nabashis Kumar Misra@nabashismisra
Radha Agarkar@radhaagarkar
- Radha Agarkar@radhaagarkar
Radha Agarkar posted to the wire 3742 days ago

Drag and drop programming language http://snap.berkeley.edu/ #Programming #Language
- Radha Agarkar@radhaagarkar
Radha Agarkar is now a friend with Arup Ghosh 3742 days ago
Radha Agarkar@radhaagarkar
Arup Ghosh@arup
- Arup Ghosh@arup
Arup Ghosh is now a friend with Radha Agarkar 3742 days ago
Arup Ghosh@arup
Radha Agarkar@radhaagarkar
- Jit@jit.aber
Jit posted to the wire 3743 days ago

Perl common flags http://perldoc.perl.org/functions/-X.html # Perl #Flags #Trick
- Nadia Baig@Nadia
Nadia Baig is now a friend with Jitendra Prajapati 3744 days ago
Nadia Baig@Nadia
Jitendra Prajapati@jprajapati81
- Jitendra Prajapati@jprajapati81
Jitendra Prajapati is now a friend with Nadia Baig 3744 days ago
Jitendra Prajapati@jprajapati81
Nadia Baig@Nadia
- Poonam Mahapatra@poonam
Poonam Mahapatra posted to the wire 3745 days ago

#Newick #Utilities #Tutorial http://cegg.unige.ch/system/files/nwutils_tutorial.pdf
- sanjeet kumar@ksanjeet
sanjeet kumar is now a friend with Poonam Mahapatra 3745 days ago
sanjeet kumar@ksanjeet
Poonam Mahapatra@poonam
- Poonam Mahapatra@poonam
Poonam Mahapatra is now a friend with sanjeet kumar 3745 days ago
Poonam Mahapatra@poonam
sanjeet kumar@ksanjeet
- sanjeet kumar@ksanjeet
sanjeet kumar is now a friend with Jitendra Narayan 3745 days ago
sanjeet kumar@ksanjeet
Jitendra Narayan@admin
- Jitendra Narayan@admin
Jitendra Narayan is now a friend with sanjeet kumar 3745 days ago
Jitendra Narayan@admin
sanjeet kumar@ksanjeet
- Poonam Mahapatra@poonam
Poonam Mahapatra commented on the blog List of gene ontology software and tools 3745 days ago

Thanks for such a useful list of tools for GO study. I found FUNC: a package for detecting significant associations between gene sets and ontological annotations (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1800870/) also very useful.