BOL

segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is...

High-throughput genomics has revolutionized biological research, however, while the number of sequenced genomes grows by the day, quality assessment of the resulting assembled sequences remains complicated and mostly limited to technical measures...

Check out the new addition of synteny detection tool SimpleSynteny http://www.dveltri.com/simplesynteny/

Bioinformatics scientist at DU, Delhi, India http://www.du.ac.in/du/index.php?mact=News,cntnt01,detail,0&cntnt01articleid=10524&cntnt01returnid=83

SLURM workload manager software, a free open-source workload manager designed specifically to satisfy the demanding needs of high performance computing. This page is a HOWTO guide for setting up a SLURM installation, currently focused on a CentOS 7...

R 3.3.0 (codename “Supposedly Educational”) was released !!

The Cancer Genome Atlas (TCGA) Data Portal provides a platform for researchers to search, download, and analyze data sets generated by TCGA. https://tcga-data.nci.nih.gov/tcga/ https://cghub.ucsc.edu/

You should try http://www.ncbi.nlm.nih.gov/gds?term=rna-seq and more...

Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to support the cycle of package development. With devtools, developing a package becomes so easy that it will be...

YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST,...