BOL

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps...

Useful paper on Machine learning in bioinformatics https://bib.oxfordjournals.org/content/7/1/86.fullMachine learning in bioinformatics

The #Development of #Computational Biology in #SouthAfrica: #Successes Achieved and #Lessons Learnt http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004395

Project fellow position in Himachal @ http://www.cuhimachal.ac.in/download/2016/feb-2016/Project%20fellow%20advertisement.pdf

EvoDir job page http://life.mcmaster.ca/cgi-bin/my_wrap/brian/evoldir/Jobs/

Generic Genome Browser Version 2: A Tutorial for Administrators This is an extensive tutorial to take you through the main features and gotchas of configuring GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD,...

This is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene annotation, collecting data scores from a variety of modern file formats, and conversion between file formats. The...

MEDIPS: genome-wide dierential coverage analysis of sequencing MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments...

tacg – a grep for DNA http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99049/

Orthology Detection Combining Clustering and Synteny for Very Large Datasets http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0105015

This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly toward an intermediate/advanced level of instruction . . . all the while sneaking in little nuggets of UNIX® wisdom and lore. It serves as a...

File formats http://genome.ucsc.edu/FAQ/FAQformat.html#format1 #UCSC #Format