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hi all    how i can find a bioinformatics study partner ? email : karimse07@yahoo.com skype : karimse07

3D genome data and tool http://bengal.missouri.edu/~chengji/nsf_career.html #Chromosome #HiC #Analysis #Construction #Visualization #Modeling #3D #Genome #Structures

Ten Simple Rules for a Computational Biologist’s Laboratory Notebook. http://journals.plos.org/ploscollections/article?id=10.1371%2Fjournal.pcbi.1004385 #Notebook #Lab #Rules #Bioinformatics

Bioinformatics studentship and traineeship at Gargi collage http://gargi.du.ac.in/uploads/ngrey/News/Gargi_Advt_BIF_2015.pdf #Studentship #Traineeship #Gargi #Delhi #Bioinformatics

https://github.com/griffithlab/rnaseq_tutorial/wiki #RNASeq #cloud

Count the number of sequences in fastaq file. grep -c '^@' sample1.fq #Fastaq #Count #Number #Grep #Dirty #Oneliner #NGS

Remove the fasta description and just keep the identifier. perl -p -i -e 's/>(.+?) .+/>$1/g' sample1.fa #Perl #Oneliner #Trick #Tips #Fasta #Identifier #Remove

Extract sequences by their ID from a fasta file. perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.txt sample1.fa #Extract #Sequences #IDs #Fasta #Perl #Trick #Oneliner