BOL

http://ropensci.org/packages/ #data #Viz

http://www.seek4science.org/ #Semantic #Biology

Small tools for bioinformatics! https://github.com/pjotrp/bioinformatics #Bioinfo

https://github.com/chapmanb/bcbio-nextgen #NGS #SNP #Variants #RNASeq

https://github.com/OpenTreeOfLife #phylogeny

Multiple Genome Rearrangements and Ancestors ! https://github.com/ablab/mgra/ #genome #ancestor #phylogeny

Gene prioritization ! http://decrypthon.igbmc.fr/sm2ph/cgi-bin/gepetto #GeneSelection

http://lbgi.fr/neopipe/ #Protein #Seq

http://mygene.info/ #Gene #Annotation #Query

http://sourceforge.net/projects/bio2rdf/ #App #Semantic #medical #data

http://www.taverna.org.uk/ #bioinformatics

Integrated Genome Browser ! https://bitbucket.org/lorainelab/integrated-genome-browser #genome #Viz

SPAdes Genome Assembler! http://bioinf.spbau.ru/en/spades #Genome #Assembler #Omics #NGS

http://ugene.unipro.ru/ #Biodb

http://tripal.info/ #Bigdata #genomics

A fast, scalable genome analysis system ! http://mvnrepository.com/artifact/org.bdgenomics.adam/adam-parent/0.8.0 #Bigdata #genomics

Phyloinformatic Literature Unlocking Tools ! http://www.bbsrc.ac.uk/pa/grants/AwardDetails.aspx?FundingReference=BB/K015702/1 #Phylogeny

OCaml Bioinformatics Library! https://github.com/biocaml/biocaml #Biocaml

Arvados ! https://arvados.org #genomic #biomedical #opensource #bigdata

Reusable components for presenting Biological data !http://www.ebi.ac.uk/Tools/biojs/registry/ #BioGraphs