Hi Pinke,
I will suggest you to please install Cygwin https://www.cygwin.com/ and run the command line. You can find several schrodinger FAQ at http://www.schrodinger.com/kb/all/
Thanks
Hi Heba,
The overlapping criteria are commonly used when a region from dataset "overlaps" with a particular annotation.
You can predict by looking at EpiExplorer percentage which supports three main overlap criteria: Any overlap - which contain at...