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The Wire
#genome
Wire posts tagged with 'genome'
BioStar
@biostar
Thread
By
BioStar
626 days ago
Which human genome to opt for
http:/
/
lh3.github.io/
2017/
11/
13/
which-human-reference-genome-to-use
#Genome
#Human
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
1018 days ago
Fold the FASTA sequences with length $ fold -w 100 genome.fa
#Fasta
#Genome
#Fold
#Break
#Length
LEGE
@lege
Thread
By
LEGE
1146 days ago
Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer
https:/
/
www.cell.com/
cell-systems/
fulltext/
S2405-4712(21)00332-X
#msDBG
#Assembly
#Genome
Jit
@jit.aber
Thread
By
Jit
1171 days ago
Whole genome alignment
https:/
/
pdfs.semanticscholar.org/
f64b/
68973f1e836e1fcf697de709c3ffb1225ce5.pdf
#Whole
#Genome
#Alignment
#PPT
BioStar
@biostar
Thread
By
BioStar
1175 days ago
Genome assembly PPT
http:/
/
rayan.chikhi.name/
pdf/
2018-evomics-assembly-kmers.pdf
#Genome
#Assembly
#PPT
#Ryan
Neel
@neelam
Thread
By
Neel
1231 days ago
#Comparative
#genome
analysis usingsample-specific
#string
#detection
in accurate
#longreads
https:/
/
academic.oup.com/
bioinformaticsadvances/
advance-article/
doi/
10.1093/
bioadv/
vbab005/
6290003
Jit
@jit.aber
Thread
By
Jit
1323 days ago
Multi fasta to single fasta files $ perl -ne 'if (/^>(\S+)/) { close OUT; open OUT, ">$1.fasta" } print OUT' genome.fasta
#Multi
-fasta
#fasta
#multi
#genome
#files
Jit
@jit.aber
Thread
By
Jit
1601 days ago
New
#phased
#genome
#assembly
revealed, scandalous
#rotifers
have
#homologous
#chromosomes
!
https:/
/
www.biorxiv.org/
content/
10.1101/
2020.06.16.155473v1
Neel
@neelam
Thread
By
Neel
1606 days ago
Beginner’s guide to
#comparative
#bacterial
#genome
analysis using next-generation sequence data
https:/
/
microbialinformaticsj.biomedcentral.com/
articles/
10.1186/
2042-5783-3-2
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
1610 days ago
Long-read human genome sequencing and its applications
https:/
/
www.nature.com/
articles/
s41576-020-0236-x
#LongReads
#Sequencing
#Genome
#Review
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
1667 days ago
Visualize genome in terminal
https:/
/
asciigenome.readthedocs.io/
en/
latest/
usage.html#quick-start
#genome
#visualisation
biogeek
@biogeek
Thread
By
biogeek
1700 days ago
GTN: A genome structure analysis tool
http:/
/
homepage.fudan.edu.cn/
zhouyan/
files/
2013/
09/
GNT_manual_v1.0.0.pdf
#Tool
#Genome
#Validation
Rahul Agarwal
@raag
Thread
By
Rahul Agarwal
1711 days ago
https:/
/
www.genengnews.com/
news/
mgi-delivers-the-100-genome-at-agbt-conference/
#10usd
#genome
#new
#bioinformatics
#genomics
BioStar
@biostar
Thread
By
BioStar
1720 days ago
#Genome
#Analysis
#Toolkit
#Variant
Discovery in High-Throughput
#Sequencing
Data
https:/
/
gatk.broadinstitute.org/
hc/
en-us
#GATK
Jit
@jit.aber
Thread
By
Jit
1735 days ago
User can download “fetchChromSizes” from
http:/
/
hgdownload.cse.ucsc.edu/
admin/
exe/
#Chr
#Genome
#Download
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