BOL

Which human genome to opt for http://lh3.github.io/2017/11/13/which-human-reference-genome-to-use #Genome #Human

Fold the FASTA sequences with length $ fold -w 100 genome.fa #Fasta #Genome #Fold #Break #Length

Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer https://www.cell.com/cell-systems/fulltext/S2405-4712(21)00332-X #msDBG #Assembly #Genome

Whole genome alignment https://pdfs.semanticscholar.org/f64b/68973f1e836e1fcf697de709c3ffb1225ce5.pdf #Whole #Genome #Alignment #PPT

Genome assembly PPT http://rayan.chikhi.name/pdf/2018-evomics-assembly-kmers.pdf #Genome #Assembly #PPT #Ryan

#Comparative #genome analysis usingsample-specific #string #detection in accurate #longreads https://academic.oup.com/bioinformaticsadvances/advance-article/doi/10.1093/bioadv/vbab005/6290003

Multi fasta to single fasta files $ perl -ne 'if (/^>(\S+)/) { close OUT; open OUT, ">$1.fasta" } print OUT' genome.fasta #Multi-fasta #fasta #multi #genome #files

New #phased #genome #assembly revealed, scandalous #rotifers have #homologous #chromosomes ! https://www.biorxiv.org/content/10.1101/2020.06.16.155473v1

Beginner’s guide to #comparative #bacterial #genome analysis using next-generation sequence data https://microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-3-2

Long-read human genome sequencing and its applications https://www.nature.com/articles/s41576-020-0236-x #LongReads #Sequencing #Genome #Review

Visualize genome in terminal https://asciigenome.readthedocs.io/en/latest/usage.html#quick-start #genome #visualisation

GTN: A genome structure analysis tool http://homepage.fudan.edu.cn/zhouyan/files/2013/09/GNT_manual_v1.0.0.pdf #Tool #Genome #Validation

https://www.genengnews.com/news/mgi-delivers-the-100-genome-at-agbt-conference/ #10usd #genome #new #bioinformatics #genomics

#Genome #Analysis #Toolkit #Variant Discovery in High-Throughput #Sequencing Data https://gatk.broadinstitute.org/hc/en-us #GATK

User can download “fetchChromSizes” from http://hgdownload.cse.ucsc.edu/admin/exe/ #Chr #Genome #Download