HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data http://www.biomedcentral.com/1471-2105/15/280/abstract
VCF parsing library https://github.com/mendelics/vcf
Docs are already on the excellent godoc.org : http://godoc.org/github.com/mendelics/vcf
A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Datahttp://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003737
Software: http://sourceforge.net/projects/sat-assembler/
A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Data