Abstract
This project presents demonstrations of selected computer science algorithms important in bioinformatics, implemented in the spreadsheet program Microsoft Excel. Spreadsheets provide an interesting platform for demonstration of algorithms, since various steps of the calculations can be exposed in a manner that is easily comprehensible to users with little programming experience. The algorithms demonstrated include two approaches to approximate string matching (dynamic programming and Shift-AND numeric approximate matching), Hierarchical Clustering (used in phylogenetic studies and microarray analysis of gene expression), a Naive Bayes Classifier for simulated microarray gene expression data, and a simple Neural Network. These demonstrations are designed to serve as instructional aids in bioinformatics courses.
Tutorial @ http://www.cybertory.org/downloads/bae/BioinformaticsAlgorithmsInExcel.zip
One of the best resource for online bioinformatics learning is https://stepic.org/Bioinformatics-Algorithms-2 Enjoy the online learning.
Reference : cybertory
" Please add your favourite bioinformatics algorithms and tutorial links below in the comment section, for the benefit of bioinformatics and computational biology community ".
Comments
Introduction to Genetic Algorithms http://lancet.mit.edu/mbwall/presentations/IntroToGAs/
http://l1apc2.ens.utulsa.edu/~rogerw/cs7623/GA-Tutorial-93.doc
A library of efficient bioinformatics algorithms http://www.statistica.unimib.it/~dellavedova/papers/ALiBio-applied-bioinformatics.pdf
MSA algorithms http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261699/
Bioinformatics algorithms coursera
https://github.com/jschendel/bioinformatics-algorithms-coursera
Parallelized pairwise sequence alignment using CUDA on multiple GPUs http://www.biomedcentral.com/1471-2105/10/S7/A3
The FindMotif.pl program uses position-specific scoring matrices to search for sequences similar to a consensus sequence. Find more at http://www.people.vcu.edu/~elhaij/IntroBioinf/Notes/PSSM-Perl.html
A new trainable, high-speed and biologically relevant alignment algorithms of high-throughput sequencing reads to coding DNA http://nar.oxfordjournals.org/content/early/2014/05/26/nar.gku473.full
Burrows Wheeler transform in animation http://www.homolog.us/animation/
Useful bioinformatics algorithms tutorials http://homolog.us/wiki1/index.php?title=Main_Page
Useful algorithms bookmarked http://bioinformaticsonline.com/bookmarks/view/12206/bioinformatics-algorithms-tutorials