BOL: RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler

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RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler

RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler

By LEGE 1627 days ago

https://github.com/bcgsc/RNA-Bloom

RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for the following sequencing data types:

single-end/paired-end bulk RNA-seq (strand-specific/agnostic)
paired-end single-cell RNA-seq (strand-specific/agnostic)
nanopore RNA-seq (PCR cDNA/direct cDNA/direct RNA)

Written by Ka Ming Nip ✉️