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Tools to Predict the Impact of Missense Variants !
Last updated 2415 days ago by JitPrioritizing missense variants for further experimental investigation is a key challenge in current sequencing studies for exploring complex and Mendelian diseases. A large number of in silico tools have been employed for the task of...-
Bioinformatics OneLiner
Last updated 2429 days ago by Rahul NayakTo remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//g' filename.txt > newfilename_oneline.txt To get average for a column of numbers (here the second column $2): awk '{ sum += $2; n++ } END { if (n > 0) print sum / n;... -
Installing Bio::SCF perl module
Last updated 2430 days ago by Jit Comments (3)Most Perl modules are written in Perl, some use XS (they are written in C) so require a C compiler (it's easy to get this setup - don't panic), see your OS of choice below to find out how to get the right compiler. Modules... -
Some useful Bioinformatics links
Last updated 2454 days ago by JitReference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Reference-free SNP detection: dealing with the data... -
IUPAC codes
Last updated 2457 days ago by NeelIUPAC codes DNA: Nucleotide Code: Base: ---------------- ----- A.................Adenine C.................Cytosine G.................Guanine T (or U)..........Thymine (or Uracil) R.................A or G Y.................C or... -
Python learning resources for bioinformatics and computational biologist !
Last updated 2467 days ago by JitPython is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries. Professionally, Python is great for backend web development, data analysis, artificial... -
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Last updated 1062 days ago by AbhiHorizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celled eukaryotes, but a number of factors combine to make it far rarer in... -
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Last updated 2476 days ago by StrandStrand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze their data using a very intuitive workflow for the analysis and visualization of RNA-Seq data. This webinar will give an overview of the workflow which includes... -
Computational resources for TE discovery and TE detection
Last updated 2486 days ago by Abhimanyu SinghTransposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated increasing interest in developing new methods for their computational analysis. Following... -
Awk for Bioinformatician and computational biologist
Last updated 2492 days ago by Poonam MahapatraAwk is a programming language which allows easy manipulation of structured data and is mostly used for pattern scanning and processing. It searches one or more files to see if they contain lines that match with the specified patterns and then...
