Next Generation Sequencing (NGS)
https://en.wikipedia.org/wiki/Sequencing
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Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
By Strand 2990 days agoLive Webinar on RNA-Seq Data Analysis Abstract: Strand NGS supports an extensive workflow for the analysis and visualization of RNA-Seq data. The workflow includes Transcriptome / Genome alignment, Differential expression analysis with Statistical...Encode sequencing data freely available to download and use for academic means
By Rahul Agarwal 3940 days ago Comments (3)genome.ucsc.edu - In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed...BFC: a standalone high-performance tool for correcting sequencing errors from Illumina sequencing...
By Jit 2401 days agogithub.com - BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data. It is specifically designed for high-coverage whole-genome human data, though also performs well for small genomes. The BFC algorithm is a...
Pathway Analysis
Last updated 3731 days ago by Rahul Agarwal Comments (2)Pathway Analysis is usually performed with aim to enrich the genes with their functional information and reveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set...RNA-Seq Data Pathway and Gene-set Analysis Workflows
By Jit 4080 days agoDescribe the GAGE workflows on RNA-Seq data pathway analysis and gene-set analysis.Scallop: reference-based transcriptome assembler for RNA-seq
By Rahul Nayak 2424 days agogithub.com - Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be...BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 1467 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...RNA-seq workflow: gene-level exploratory analysis and differential expression
By Jit 1174 days agomaster.bioconductor.org - Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantified to the reference transcripts, and prepare gene-level count...deepTools
By Martin Jones 3700 days agoUser-friendly tools for the normalization and visualization of deep-sequencing data
