Rahul Nayak
A Bioinformatician
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MetaSim A Sequencing Simulator for Genomics and Metagenomics.
By Jit 2687 days agoab.inf.uni-tuebingen.de - Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a database of given genomes, the program allows the user to design a...Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
By BioStar 1854 days agogithub.com - Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Described by Firtina et al. (preliminary version...Precision Medicine
By Rahul Agarwal 4250 days agowww.cbsnews.com - Coupling established clinical–pathological indexes with state-of-the-art molecular profiling to create diagnostic, prognostic, and therapeutic strategies precisely tailored to each patient's requirements — hence the term “Precision...Role of microbes in forensic science
By Rahul Agarwal 4214 days ago‘Microbial clock’ determine time of deathA-allele of SLC24A5 gene is found to be responsible for variation in skin color of South-East...
By Rahul Agarwal 4169 days agoMore is the A -allele, More is fairer the Skin !!
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
Last updated 2714 days ago by Abhimanyu Singh Comments (1)kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) https://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances...Kamaleshwar Singh Lab
The focus of Dr. Singh’s research and teaching is on the molecular mechanistic basis for environmental carcinogen-induced genetic (DNA damage) and epigenetic changes, and susceptibility to human cancer development More at...Ra assembler - a de novo DNA assembler for third generation sequencing data
By biogeek 2663 days agogithub.com - Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute of Singapore (GIS). Ra is in...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By Jit 2536 days agogithub.com - Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. After...Bioinformatics Centre, Bose Institute vacancy of Research Associate / Senior Research Fellow
Bioinformatics Centre, Bose Institute vacancy of Research Associate / Senior Research Fellow Location where with post of Research Associate / Senior Research Fellow is available: Bioinformatics Centre, Bose Institute in Kolkata, West...
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