Rahul Nayak
A Bioinformatician
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Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput...
By Jit 2979 days agogithub.com - Heap, that enables robustly sensitive and accurate calling of SNPs, particularly with a low coverage NGS data, which must be aligned to the reference genome sequences in advance. To reduce false positive SNPs, Heap determines genotypes and calls...PostDoc at IISER -TVM
Postdoctoral Fellowship/ Research Associateship Eligibility : M Phil / Phd Location : Thiruvananthapuram Last Date : 30 Apr 2016 Hiring Process : Face to Face Interview IISER -TVM The Postdoctoral Fellowship/Research Associateship...Manta: rapid detection of structural variants and indels for germline and cancer sequencing...
By Jit 2940 days agogithub.com - Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles...NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
By Jit 2870 days agogithub.com - NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV callers and generates two integrated call sets (sensitive/stringent) for different...Indexcov: fast coverage quality control for whole-genome sequencing
By Jit 2847 days ago Comments (1)github.com - indexcov, an efficient estimator of whole-genome sequencing coverage to rapidly identify samples with aberrant coverage profiles, reveal large-scale chromosomal anomalies, recognize potential batch effects, and infer the sex of a...lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
By BioJoker 2757 days agogithub.com - lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user the ability to change alignment parameters depending on the reads...flo
By Jitendra Narayan 3778 days agogithub.com - flo - same species annotations lift over pipeline Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the species and good quality...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By Rahul Nayak 2536 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...Project Assistant/ JRF at North Eastern Hill University
Project Assistant/ JRF Eligibility : ME/M.Tech, Any Graduate, MSc Location : Shillong Last Date : 23 Feb 2016 Hiring Process : Face to Face Interview North Eastern Hill University Project Assistant/ JRF Jobs recruitment in North...FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
By Jit 2330 days agobioinfo.ut.ee - FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the...
