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HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly...
By Jit 1489 days agogithub.com - Despite marked recent improvements in long-read sequencing technology, the assembly of diploid genomes remains a difficult task. A major obstacle is distinguishing between alternative contigs that represent highly heterozygous regions. If primary...Google Genomics
By Reshma Khatun 3691 days agocloud.google.com - Google Genomics provides an API to store, process, explore, and share DNA sequence reads, reference-based alignments, and variant calls, using Google's cloud infrastructure. Store alignments and variant calls for one genome or a million. Process...HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly...
By Jit 1295 days agogithub.com - HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes among candidate assemblies using...Research Scientist – National Institute of Cholera and Enteric Diseases
The following post is to be filled up on purely temporary basis under the project entitled "Second phase of Task Force Biomedical Informatics Center of ICMR" under Dr. Santasabuj Das, Scientist 'D' of this Institute:- 01. Scientist II...RagTag: a collection of software tools for scaffolding and improving modern genome assemblies
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By Surabhi Chaudhary 1080 days agoGenome assembly pipeline !Postdoctoral fellowship in Bioinformatics
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Applications are invited along with complete bio-data and attested copies of certificates of qualifications, experience etc. for the one post of Research Fellow and one post of Program Assistant under PURSE Grant of the University in Centre for...chromeister: An ultra fast, heuristic approach to detect conserved signals in extremely large...
By Jit 1025 days agogithub.com - chromeister: An ultra fast, heuristic approach to detect conserved signals in extremely large pairwise genome comparisons. USAGE: -query: sequence A in fasta format -db: sequence B in fasta format -out: output matrix -kmer Integer: k>1...
