Martin Jones
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One-Year Internship In Computational Biology & Bioinformatics
This one-year internship program has an inter-disciplinary curriculum that rests on research strengths and infrastructure at the computational biology & bioinformatics facility at Rajiv Gandhi Centre for Biotechnology . Using live demonstration...Sequence assembly with MIRA 4
By Priya Singh 3155 days ago Comments (1)mira-assembler.sourceforge.net - MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophoresis sequencing (aka Sanger sequencing) 454 pyro-sequencing (GS20, FLX or Titanium) Ion...Trimmomatic: A flexible read trimming tool for Illumina NGS data
By Jit 3146 days agowww.usadellab.org - Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpaired.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10...Desai Lab
Evolutionary Dynamics and Population Genetics Natural selection and other evolutionary forces lead to particular patterns of evolutionary dynamics, and they leave characteristic signatures on the genetic variation within populations. We use a...ALE: a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and...
By Neel 3135 days ago Comments (1)sc932.github.io - Assembly Likelihood Evaluation (ALE) framework that overcomes these limitations, systematically evaluating the accuracy of an assembly in a reference-independent manner using rigorous statistical methods. This framework is comprehensive, and...MEDEA: Comparative Genomic Visualization with Adobe Flash
By Jit 3135 days agowww.broadinstitute.org - As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the human visual system to detect trends and spot outliers is necessary in such...RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
By Abhi 3134 days agohttp://rast.nmpdr.org/ - The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic features (i.e., protein-encoding genes...Bioinformatics National Certification (BINC) Examination 2016
Bioinformatics National Certification (BINC) Examination 2016 Department of Biotechnology, Government of India, New Delhi & Pondicherry University, Puducherry Starting of online submission of application : April 13, 2016 Last date for...SLURM
By Jit 3127 days agowiki.fysik.dtu.dk - SLURM workload manager software, a free open-source workload manager designed specifically to satisfy the demanding needs of high performance computing. This page is a HOWTO guide for setting up a SLURM installation, currently focused on a CentOS 7...Scientists post at Monsanto
Sustainable agriculture is at the core of Monsanto. We develop technologies that enable farmers to produce more crops while conserving natural resources. Monsanto scientists are conducting research and development (R&D) to revolutionize plant...
