Rahul Agarwal
I'm a Bioinformatician and Programmer
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Structure of Binary files used for storing sequencing data-bam and sff
Last updated 4123 days ago by Rahul AgarwalMany times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link for those who looking for structure of Bam and sff...Illumina reveals first dataset of long reads
By Rahul Agarwal 4111 days agoWith the help of Moleculo technology , acquired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length is around 8,500 base pairs in release dataset. Best thing about this, there...Eivind Hovig's Lab
Bioinformatics relevant research topics are: genomic scale studies endogenous mechanisms of mutations, germ line and somatic computational aspects of immunology in cancer signalling networks three-dimensional organization of information in...The Breitbart lab
Breitbart’s lab has created a new branch of biology called metagenomics in which one can sample and sequence genetic material collected from the environment. Breitbart lab is located in the College of Marine Science at the University of South...Application Scientist in Strand LifeSciences Bangalore
Job Description We are looking for a motivated application scientist to help evaluate, compare, and develop next generation sequencing (NGS) data analysis methods. The successful candidate should be able to quickly understand the state-of-art...Metagenomics role in antibiotic resistance
By Rahul Agarwal 3828 days agowww.landesbioscience.com - Related latest article: http://www.nature.com/nature/journal/v509/n7502/pdf/nature13377.pdf-
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
Last updated 2574 days ago by Abhimanyu Singh Comments (1)kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) https://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances... AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
By BioStar 2529 days agosourceforge.net - AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed up to ∼98% reduction of false variants when combined to...ALPACA: A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.
By Seema Singh 2400 days agogithub.com - ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set. Detail paper...
