chagall.med.cornell.edu - RNAseq can be roughly divided into two "types":
Reference genome-based - an assembled genome exists for a species for which an RNAseq experiment is performed. It allows reads to be aligned against the reference genome and significantly improves...
pachterlab.github.io - With kallisto | bustools you can
Generate a cell x gene or cell x transcript equivalence class count matrix
Perform RNA velocity and single-nuclei RNA-seq analsis
Quantify data from numerous technologies such as...
rosalind.info - Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works.
http://rosalind.info/problems/list-view/
github.com - proActiv is an R package that estimates promoter activity from RNA-Seq data. proActiv uses aligned reads and genome annotations as input, and provides absolute and relative promoter activity as output. The package can be used to identify active...
Uncovering Mechanisms of Hepatotoxicity for High Affinity Antisense Oligonucleotides – 3’ end RNA-seq Profiling Using GeneSpring GX
High affinity antisense oligonucleotides (ASOs) containing bicylic modifications (BNA) such as locked...