Jitendra Narayan
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Queensland Centre for Medical Genomics, Grimmond Lab
Category: researchlabs:Computational Biology
PI: Professor Sean Grimmond
By Jitendra Narayan 4151 days agoQueensland Centre for Medical Genomics Research Area: pancreatic cancer; ovarian cancer; prostate cancer; bowel cancer; brain cancer; endometrial cancer; breast cancer; personalised medicine; high-throughput genomics Link @...Complex Systems: From Physics to Biology October 15-16 2013 at JNU Convention Center
The symposium intents to focus on complex systems arising in a variety of settings in physics and biology. In particular, applications of the concepts of physics to biological sciences will be the major theme of this meeting. Selected Topics:...Rolland-Lagan lab
The Rolland-Lagan lab at the University of Ottawa is specializing in computational and developmental biology. We use a combination of experimental work, microscopy, image analysis and computer simulations to explore developmental mechanisms in two...Tigers genome sequenced
By Rahul Agarwal 4086 days agoOnly 4.4 percent DNA difference between Tiger and house catsOpera: An optimal genome scaffolding program
By Jit 2554 days agosourceforge.net - Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly ). It uses information from paired-end or long reads to optimally order and orient contigs assembled from...
SPAdes hybrid genome assembly
Last updated 2554 days ago by Jit Comments (1)When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was used to produce the B fragilis assembly by Mick Watson’s group. Again, running spades.py will show you the...Memories Can Be Passed Down Through DNA
By Radha Agarkar 3851 days agoThe premise of Assassin's Creed is the reliving of other people's memories stored inside DNA. Well scientists have found that in mice, it actually happens! Anthony is joined by special guest and our friend Tara Long from Hard Science to explain how...COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
By Jit 2546 days agoftp.genomics.org.cn - An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k-mer frequencies. We evaluated our tool on 30× simulated pair-end reads from Arabidopsis thaliana with 1% base error. COPE...-
Tools for bacterial whole genome annotation
Last updated 2535 days ago by Radha AgarkarRAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours per genome but I think this is the best way to get a high quality annotation... A History of Bioinformatics (in the Year 2039)
By Martin Jones 3777 days agoC. Titus Brown http://video.open-bio.org/video/1/a-history-of-bioinformatics-in-the-year-2039
