Radha Agarkar
A Bioinformatician
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- Rahul Nayak on Tools for Searching Repeats And Palindromic Sequences (1735 days ago): Check out this GAP-Seq: a method for identification of DNA...
- Jit on Tools for Searching Repeats And Palindromic Sequences (2213 days ago): I wrote a tools "Palindromer" to find palindromes in whole genome sequences....
- Abhi on SLURM basics ! (3106 days ago): In addition to that, I found this weppage also...
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Radha Agarkar's pages
Tools for bacterial whole genome annotation
Last updated 2532 days ago by Radha AgarkarRAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours per genome but I think this is the best way to get a high quality annotation...-
Tools for Searching Repeats And Palindromic Sequences
Last updated 2411 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later... -
SLURM basics !
Last updated 3114 days ago by Radha Agarkar Comments (1)SLURM is a queue management system and stands for Simple Linux Utility for Resource Management. SLURM was developed at the Lawrence Livermore National Lab and currently runs some of the largest compute clusters in the world. SLURM is similar in...
