Priya Singh
A Bioinformatician !!!
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BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2911 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...Jarvis’ laboratory
Dr. Jarvis’ laboratory studies the neurobiology of vocal communication. We want to know how the brain generates, perceives, and learns behavior. We use vocal communication as a model behavior. Emphasis is placed on the molecular pathways involved in...nQuire: A statistical framework for ploidy estimation using NGS short-read data
By Jit 2807 days agogithub.com - nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish...Professor and Associate Professors (PB-IV) Assistant Professors (PB-III) Job at IIIT, Allahabad
Indian Institute of Information Technology, Allahabad Devghat, Jhalwa, Allahabad – 211012, Uttar Pradesh, India E-mail: contact@iiita.ac.in, faculty.applications@iiita.ac.in Web: www.iiita.ac.in Phone : 0532-2922031/27/67 Applications are...ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
By Neel 2456 days agogithub.com - ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from...
Find certain files/documents in Linux OS
Last updated 4567 days ago by Rahul NayakAs bioinformatician I know the fact that we usually handle the large dataset and lost in the huge numbers of files and folders. In order to search the missing file a strong search command is required. The Linux Find Command is one of the most...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 2424 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...Raghava's Group
Raghava's group is known for developing open source software or web servers. Group have developed large number of web-based services. Find more at http://www.imtech.res.in/raghava/FiNGS: Filters for Next Generation Sequencing
By Neel 2049 days agogithub.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...Assistant Professor at SARDAR PATEL UNIVERSITY
SARDAR PATEL UNIVERSITY Centre for Interdisciplinary Studies in Science and Technology No.: SPU/CISST/Advt./2014-15/519 ADVERTISEMENT for Teaching Positions (Contractual) Applications for the following Contractual Teaching Position are...
