Priya Singh
A Bioinformatician !!!
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DIAMOND
By Jit 2770 days agogithub.com - DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer...Tetra-Nucleotide Analysis
By Jit 2762 days agochunlab.wordpress.com - A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though...Ten International Scholarships for Indian Biotechnology and Bioinformatics Students
By Priya Singh 2757 days ago Comments (10)10 International Scholarships for Indian StudentsHINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
By Jit 2483 days agogithub.com - Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://genome.cshlp.org/content/27/5/747.full An ipython notebook to...ERGO 2.0 Bioinformatics suites
By Jit 2750 days agowww.igenbio.com - ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary algorithms, and the most comprehensive genomic database integrated with...EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
By Rahul Nayak 2394 days agoarthropods.eugenes.org - EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University,...Senior Bioinformatics Software Developer, Hyderabad, Telangana
DuPont Pioneer is the world leader in plant biotechnology area including discovery, development and delivery of elite crop genetics. DuPont Pioneer is aggressively building Big Data and Predictive Analytics capabilities in order to deliver improved...The 10th North East Bioinformatics Network (NEBINet) Annual Coordinators' Meet
By Jit 2564 days agoThe 10th North East Bioinformatics Network (NEBINet) Annual Coordinators' Meet organised by the Bioinformatics Centre, St Edmund's College, Shillong and sponsored by the Department of Biotechnology, Government of India, was held at St Edmund's...GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or...
By Shruti Paniwala 2359 days agoacademic.oup.com - GMcloser uses likelihood-based classifiers calculated from the alignment statistics between scaffolds, contigs and paired-end reads to correctly assign contigs or long reads to gap regions of scaffolds, thereby achieving accurate and efficient gap...Bioinformatics tools developed for Oxford Nanopore data analysis !
By biogeek 2525 days ago Comments (2)One of the technical advantages of ONT data is the read length, which offers great prospects for genome assembly.
