Jitendra Prajapati
A Bioinformatician
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Senior Manager (Bioinformatics Operations) at RGCB, India
Senior Manager (Bioinformatics Operations) Rajiv Gandhi Centre for Biotechnology (RGCB) - Thiruvananthapuram, Kerala ₹15,600 - ₹39,100 a month Rajiv Gandhi Centre for Biotechnology (RGCB) invites applications for the following positions from...Ra assembler - a de novo DNA assembler for third generation sequencing data
By biogeek 2556 days agogithub.com - Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute of Singapore (GIS). Ra is in...TGNet
By Shruti Paniwala 3047 days agogithub.com - Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo assemblies consist in many pieces of contiguous sequence (contigs) arranged in thousands of scaffolds instead of small numbers of...AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
By Manisha Mishra 2445 days agogithub.com - AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph AlignGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa...Gene Finding and Predictions
By Poonam Mahapatra 3045 days agogenome.crg.es - In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by...EAGLER: a scaffolding tool for long reads.
By Jit 2398 days agogithub.com - EAGLER is a scaffolding tool for long reads. The scaffolder takes as input a draft genome created by any NGS assembler and a set of long reads. The long reads are used to extend the contigs present in the NGS draft and possibly join overlapping...Sushi: An R/Bioconductor package for visualizing genomic data
By Jit 3040 days agowww.bioconductor.org - Sushi: An R/Bioconductor package for visualizing genomic dataSWALO: Scaffolding with assembly likelihood optimization
By Jit 2382 days agoatifrahman.github.io - SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Please email your questions, comments, suggestions, and bug reports to...CIRCOS Visualize !!
By Jit 3038 days agomkweb.bcgsc.ca - Before uploading a data file, check the samples gallery to make sure that your data format is compatible. Your file must be plain text. Your data values must be non-negative integers. Data must be space-separated (one or...Converting a VCF into a FASTA given some reference !
By Jit 2351 days agoconverting a VCF file into a FASTA file given a reference sequence
