Jit
Enthusiast computational biologist with business dream !!!
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Research Associate Bioinformatics in IISc Recruitment 2020
Research Associate Bioinformatics in IISc Recruitment 2020 Essential Qualifications: Ph.D. (Bioinformatics/ Biophysics/ Biotechnology or any other stream of biological/ physical sciences) with a minimum of two publications in reputed peer...The genome factory !!!
By Madhvan Reddy 4436 days agoWorld’s first $1,000 genome enables ‘factory’ scale sequencing for population and disease studiesIntroduction to Bioinformatics
By eliabrodsky 2470 days agoLearn about bioinformatics online by watching videos, reading engaging articles and practicing bioinformatics skills using public domain datasets.PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the...
By BioStar 2727 days agogithub.com - Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via: sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config On MacOS, the Apple...Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
By BioStar 2226 days agogithub.com - Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory footprint for 100 million reads, it can be run...How to sequence the human genome - Mark J. Kiel
By Rahul Nayak 4302 days agoView full lesson: http://ed.ted.com/lessons/how-to-sequence-the-human-genome-mark-j-kiel Your genome, every human's genome, consists of a unique DNA sequence of A's, T's, C's and G's that tell your cells how to operate. Thanks to technological...pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2847 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...Long read assembly workshop !
By Rahul Nayak 2714 days ago Comments (4)sepsis-omics.github.io - This is a tutorial for a workshop on long-read (PacBio) genome assembly. It demonstrates how to use long PacBio sequencing reads to assemble a bacterial genome, and includes additional steps for circularising, trimming, finding plasmids, and...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By BioJoker 2534 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...deepTools
By Martin Jones 4140 days agoUser-friendly tools for the normalization and visualization of deep-sequencing data
