Jit
Enthusiast computational biologist with business dream !!!
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Harvest: a suite of core-genome alignment and visualization tools
By Jit 2547 days agoharvest.readthedocs.io - Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees. Tools Parsnp - Core-genome...xmatchview: smith-waterman alignment visualization
By Rahul Nayak 2527 days agogithub.com - xmatchview and xmatchview-conifer are imaging tools for comparing the synteny between DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_match and displays the alignment in a variety of image formats. xmatchview and...Software and Tools to detect structure variation with long reads !!
By Archana Malhotra 2815 days agoStructural variation caller tools using long readsFools guide
By Poonam Mahapatra 2797 days agosfg.stanford.edu - This website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms acquire and process transcriptomic high-throughput sequencing data without having to learn extensive bioinformatics skills. It covers...Mulan: MUltiple sequence Local AligNment and conservation visualization tool
By Rahul Nayak 2688 days agomulan.dcode.org - Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It...CABOG: Celera Assembler with Best Overlap Graph
By Abhimanyu Singh 2754 days agowww.jcvi.org - CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as large genomes such as...
Useful Publications and Websites for Deep Sequencing Data Analysis
Last updated 3986 days ago by Rahul NayakGlobal overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to animal and microbial systems] Sense from sequence reads: methods for...Research Associate Bioinformatics in IISc Recruitment 2020
Research Associate Bioinformatics in IISc Recruitment 2020 Essential Qualifications: Ph.D. (Bioinformatics/ Biophysics/ Biotechnology or any other stream of biological/ physical sciences) with a minimum of two publications in reputed peer...Amity University Bioinformatics Summer Program - Kolkata
By eliabrodsky 1997 days agoRegistrations are now open for the 2019 Summer Bioinformatics Training program at Amity University, Kolkata.The genome factory !!!
By Madhvan Reddy 3969 days agoWorld’s first $1,000 genome enables ‘factory’ scale sequencing for population and disease studies
