Neel
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BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2698 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...nQuire: A statistical framework for ploidy estimation using NGS short-read data
By Jit 2594 days agogithub.com - nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish...RCB Gurgaon Bioinformatics RA/PA Openings
Advt. No.1/2014 Recruitment for Research Associate and Project Assistant positions Regional Centre for Biotechnology (RCB) is an autonomous academic institution established by the Department of Biotechnology, Govt. of India with regional and...ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
By Neel 2243 days agogithub.com - ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from...Update Genome Workbench 2.7.15 released
By Surabhi Chaudhary 4394 days agoNCBI Genome Workbench updates with important bugs fixed.LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 2211 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...Junior Research Fellow at IARI
DIVISION OF NEMATOLOGY INDIAN AGRICULTURAL RESEARCH INSTITUTE NEW DELHI 110012 Applications are invited for the posts of one Junior Research Fellow in the DBT funded project entitled “Plant parasitic nematode genome informatics - insilico...FiNGS: Filters for Next Generation Sequencing
By Neel 1836 days agogithub.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...Bioinformatic/computational postdoc at South Dakota State University
We seek an enthusiastic postdoctoral researcher to work with the Plant Science team within the Biochemical Spatio-temporal NeTwork Resource (BioSNTR). Bio-SNTR is a state-funded virtual research center aimed at promoting imaging and informatics...
Libraries or management tools for high throughput sequencing data
Last updated 521 days ago by LEGEGATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop...
