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pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2846 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...
List of bioinformatics open source projects/software.
Last updated 4430 days ago by Rahul NayakOpen source software is software that can be freely used, changed, and shared (in modified or unmodified form) by anyone. Open source software is made by many people, and distributed under licenses that comply with the Open Source Definition.The...Installing Salmon for Trinity !
By Rahul Nayak 2806 days ago Comments (1)Installing Trinity dependencies !The 2014 CeMM PhD Program
For our next PhD Program starting in October 2014 we are looking for exceptionally motivated PhD candidates with a keen interest in genomics and medicine and a strong interest to work in teams. The 2014 CeMM PhD Program will focus on two thematic...nanofilt: Filtering and trimming of long read sequencing data
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MAULANA AZAD NATIONAL INSTITUTE OF TECHNOLOGY BHOPAL No. CSE/14/1038 Walk in Interview for the post of JRF under TEQIP-II SN Department – Qualification Post Graduation – Time 1 Bio-Informatics & Mathematics M.Tech...nQuire: a statistical framework for ploidy estimation using next generation sequencing
By Jit 2714 days agogithub.com - nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely to be useful in epidemiological studies of pathogens, artificial selection experiments, and for historical or ancient samples where...Post doc in Computational Genetics and Genomics at CEINGE Biotecnologie Avanzate, Naples, Italy
We are seeking one motivated scientist to analyze genomics and transcriptomics data of a large collection of neuroblastoma tumors. The successful candidate will be part of a team of researchers with extensive expertise in genome cancer study. He/she...AMStat: display statistics of large sequence files from next generation sequencing projects
By Neel 2677 days agosamstat.sourceforge.net - SAMStat is an efficient C program to quickly display statistics of large sequence files from next generation sequencing projects. When applied to SAM/BAM files all statistics are reported for unmapped, poorly and accurately mapped reads...New version of Modeller, 9.13
By Radha Agarkar 4407 days agoThe new version of Modeller, 9.13, is now available for download!
