Our research group is primarily focused on the analysis of whole genome sequence data to identify genetic variation (primarily structural variation) and examine their potential functional impact in disease phenotypes. We are particularly interested...
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection,...
rpubs.com - An R package for performing principal component analysis (PCA) of genomics data. The package performs PCA, generates the publication-ready plots, and identifies population-specific outlier individuals. The package can be accessed on...
Raphael Lab research is focused on Bioinformatics and Computational Biology.
Current research interests include next-generation DNA sequencing, structural variation, genome rearrangements in cancer and evolution, and network analysis of somatic...
https://www.rplumber.io/ - plumber allows you to create a REST API by merely decorating your existing R source code with special comments. Take a look at an example.
# plumber.R
#* Echo back the input
#* @param msg The message to echo
#* @get /echo
function(msg=""){...
This research group works on problems from the fields of Bioinformatics, Biotechnology, Data Mining, and Information Retrieval. The group's research projects includes Comparative Genomics of Bacterial genomes, Metagenomics, Genomic databases,...
github.com - The PheWAS R package is designed to provide an accessible interface to the phenome wide association study. For a description of the methods available and some simple examples, please see the package vignette or the R documentation. For...
christophergandrud.github.io - You can also create Sankey diagrams with sankeyNetwork. Here is an example using downloaded JSON data:
https://en.wikipedia.org/wiki/Sankey_diagram
zuguang.de - This is the documentation of the circlize package. Examples in the book are generated under version 0.4.1.
If you use circlize in your publications, I would be appreciated if you can cite:
Gu, Z. (2014) circlize implements and...