Jit
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pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2846 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...Comparative Genomics in Ensembl
By Rahul Nayak 4065 days agoThe Ensembl browser provides viewable whole-genome alignments, homologues and phylogenetic gene trees, protein families, and ancestral sequences. Learn how to view and export these data in this video.Bioinformatics Scripts
By Jit 4064 days agomilkweedgenome.org - Some of the useful bioinformatics scripts. For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly. http://milkweedgenome.org/?q=scriptsAlignQC: A tool for assessing an alignment, and generating reports that are easy to share
By Jit 2772 days agowww.healthcare.uiowa.edu - Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser...ChromEvol
By Jit 4062 days agowww.tau.ac.il - Chromosome number is a remarkably dynamic feature of eukaryotic evolution. Chromosome numbers can change by a duplication of the whole genome (a process termed polyploidy), or by single chromosome changes (ascending dysploidy via, e.g., chromosome...JRF/RA Structural/Computational Biology at ICGEB
Research Associate and JRF positions in the Structural and Computational Biology Group starting 1st March 2015. Collaborative projects include work on: a) bioinformatics, systems and computational biology b) malaria c) drug discovery d)...Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets
By Neel 2438 days agogithub.com - Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them. Developper: Gaëtan Benoit, PhD, former member of...SENIOR RESEARCH FELLOW at All India Institute of Medical Sciences (AIIMS Delhi) - Delhi, Delhi
Applications are invited from eligible candidates for the following temporary post in an ICMR funded Research Project entitle “An Investigation to find out reasons for Phenotypic Heterogeneity/Variability in 22q11.2 Microdeletion Syndrome” in...Scientist Bioinformatics Positions
Bioinformatics-Multi_Omics_Integration https://www.researchgate.net/job/939073_Senior_Scientist_Bioinformatics-Multi_Omics_Integration Senior_Scientist_Bioinformatics-Transcriptomics_Analysis...
