Shruti Paniwala
A Bioinformatician
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Genome Context Viewer (GCV)
By LEGE 553 days agogithub.com - The Genome Context Viewer (GCV) is a web-app that visualizes genomic context data provided by third party services. Specifically, it uses functional annotations as a unit of search and comparison. By adopting a common set of annotations, data-store...Atlas of ancient inter-ethnic group !!!
By Jit 3936 days agoDNA samples of living people infer the ancient biological relationship ...Mulan: MUltiple sequence Local AligNment and conservation visualization tool
By Rahul Nayak 2684 days agomulan.dcode.org - Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It...Computational Biologist Scientist @ Strand Life Sciences
We are looking for a motivated application scientist to help evaluate, compare, and develop next generation sequencing (NGS) data analysis methods. The successful candidate should be able to quickly understand the state-of-art computational biology...xmatchview: smith-waterman alignment visualization
By Rahul Nayak 2523 days agogithub.com - xmatchview and xmatchview-conifer are imaging tools for comparing the synteny between DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_match and displays the alignment in a variety of image formats. xmatchview and...Roth Lab
The Roth Lab seeks insight into biological systems through genome- and proteome-scale experimentation and analysis. Current computational interests: Systematic analysis of genetic epistasis to identify redundant or compensatory systems and to...assemblytics: delta file to analyze alignments of an assembly to another assembly or a reference...
By Jit 2355 days agohttp://assemblytics.com/ - Download and install MUMmer Align your assembly to a reference genome using nucmer (from MUMmer package) $ nucmer -maxmatch -l 100 -c 500 REFERENCE.fa ASSEMBLY.fa -prefix OUT Consult the MUMmer manual if you encounter problems Optional: Gzip...Postdoc Position in Computational Biology
The Computational Biology Group of Interdisciplinary Center for Clinical Research (IZKF) Aachen, RWTH Aachen University Hospital, Aachen, invites applicants for PhD candidate or postdoctoral position in computational biology in one of the...NanoPack: visualizing and processing long-read sequencing data
By Jit 2298 days agogithub.com - The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are...
