Poonam Mahapatra
Bioinformatics Researcher
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Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
By Jit 3132 days agowww.sanger.ac.uk - Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif...GenomeThreader: Gene Prediction Software
By Neel 2863 days agogenomethreader.org - GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via...WEGO : simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation...
By BioStar 2307 days agowego.genomics.org.cn - WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results. As the GO vocabulary became more and more popular, WEGO was widely adopted and used in many...GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
By Poonam Mahapatra 2987 days agosourceforge.net - GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior...GABi
GABi Research The major researching fields defined as the GABi scope are described next: Sequence Analysis Protein Structure Prediction Comparative Genomics Functional Analysis of Residues on Protein Families Gene/Protein...
My commonly used commands in Bioinformatics
Last updated 2933 days ago by Rahul NayakFYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fastq.gz | racon -t 24 long_reads.fastq.gz - assembly.fasta...Update Genome Workbench 2.7.15 released
By Surabhi Chaudhary 4543 days agoNCBI Genome Workbench updates with important bugs fixed.Research Associate (RA) at IOB
Applications are invited for a post of Research Associate (RA) or Senior Research Fellow (SRF) in the ICMR project on "Integrated Analysis of Multi-omics Data in Human Gliomas". We are looking for a motivated candidate for handling proteomic...CANU genome assembly parameters !
By Rahul Nayak 2768 days agoChoose the appropriate parameters to run Canu and run it.Research Associate (RA) at INSTITUTE OF ADVANCED STUDY IN SCIENCE AND TECHNOLOGY
INSTITUTE OF ADVANCED STUDY IN SCIENCE AND TECHNOLOGY (An Autonomous Institute under Department of Science and Technology, Govt. of India) Paschim Boragaon, Garchuk, Guwahati-781035 Appointment Adv.No.2 Applications in plain paper are...
