Poonam Mahapatra
Bioinformatics Researcher
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ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
By Neel 2393 days agogithub.com - ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from...RA Bioinformatics at CIBA
The following posts are to be filled purely on temporary basis under CIBA Component of “Centre for Agricultural Bioinformatics (CABin)” project at this Institute. Research Associate – one post Date & Time of Interview 18th Feb 2015 at...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 2361 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...JRF in Bioinformatics @ Tezpur University
Applications are invited for one temporary position of Junior Research Fellow (JRF) in the DBT Twinning Project entitled ‘In-Silico design and evaluation of sequences for γD crystalline protein’ under the Principal Investigator Dr. Anupam Nath Jha,...FiNGS: Filters for Next Generation Sequencing
By Neel 1986 days agogithub.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...RA / Research Associate Bioinformatics/Computational Biologist
The following posts are urgently required to be filled for the Department of Biotechnology, Government of India funded project entitled "Computational Core for Plant Metabolomics" administrated by Prof Indira Ghosh, School of Computational and...
Libraries or management tools for high throughput sequencing data
Last updated 671 days ago by LEGEGATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop...How to Prepare your Bioinformatics CV ?
By Neel 4196 days ago Comments (1)Preparing a bioinformtatics CV is also an art as well as a requirement for a person applying for a job .Qualimap2: Evaluating next generation sequencing alignment data
By Jit 2886 days agoqualimap.bioinfo.cipf.es - Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like...Bioinformatics Project Assistant at Pune University
Pune University Recruitment 2015 – Project Asst Posts: Savitribai Phule Pune University has given a notification for the recruitment of Project Assistant vacancies for the project entitled “Molecular Characterization of Organisms for Therapeutic...
