Poonam Mahapatra
Bioinformatics Researcher
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ARCS: scaffolding genome drafts with linked reads
By Rahul Nayak 3172 days agogithub.com - ARCS, an application that utilizes the barcoding information contained in linked reads to further organize draft genomes into highly contiguous assemblies. We show how the contiguity of an ABySS H.sapiensgenome assembly can be increased over...Project Fellow @ National Institute of Malaria Research
National Institute of Malaria Research Sector 8, Dwarka, Delhi -110077 WALK IN INTERVIEW One position of project fellow is to be filled up in a DRL- funded research project on Molecular and morphological characterization of An. fluviatilis...MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
By Rahul Nayak 3106 days agogithub.com - MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of aligners and...The Graveley Lab
Research in the Graveley lab is primarily focused on the regulation of alternative splicing and small RNA mediated gene regulation. These are fascinating and extraordinarily important mechanisms by which genes can be regulated. Our long-term goals...P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
By Jit 3074 days agowww.fishbrowser.org - P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This tool aims to improve the completeness of both protein-coding and non-coding genes. After this tool was applied to scaffolding human contigs,...Ph.D. student in Computational Systems Biology
Ph.D. student in Computational Systems Biology Location : The Luxembourg Centre for Systems Biomedicine (LCSB) at the University of Luxembourg, Luxembourg, Luxembourg Deadline for applications : unknown. Description : The Luxembourg Centre...
getopts.pl file
By Jit 3071 days agoSSPACE_longread complain for getopts.pl file. To resolve this, download and have in SSPACED-Longreads folder. Cheers :)Research Fellow @ Mendel laboratory
IRCCS Casa Sollievo della Sofferenza – Mendel laboratory is seeking one talented bioinformatician (Rome) Start date: immediate Duration: 1 year Funding Source: Institutional Salary on grant: B2 (€ 22.000/year gross) Contact Person...ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole...
By Rahul Nayak 3053 days agogithub.com - ChopStitch is a new method for finding putative exons and constructing splice graphs using an assembled transcriptome and whole genome shotgun sequencing (WGSS) data. ChopStitch identifies exon-exon boundaries in de novo assembled RNA-seq data with...Bioinformatics group at Boku University
The Bioinformatics group at Boku University has two main areas of interest, underpinning a common goal, the study of complex systems in living organisms. To overcome the engineered redundancies and combinatorial effects prevalent in higher...
