Jit
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LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 2307 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...JNU Neuroscience/Systems Biology/Mathematical modeling JRF Vacancies
School of Computational and Integrative Sciences Jawaharlal Nehru University New Delhi 110067 Recruitment for Project Applications were invited from the citizens of India for filling up the following temporary position for the CSIR sponsored...FiNGS: Filters for Next Generation Sequencing
By Neel 1932 days agogithub.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...
Libraries or management tools for high throughput sequencing data
Last updated 617 days ago by LEGEGATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop...Illumina Smartphone Chip !!!
By Robert M Willioms 4183 days agoIllumina, the company that claims it brought human genome sequencing down to $1000 prices, has now turned its attention to a consumer product - a chip that you can plug into your smartphone and have it read your genetic information.Qualimap2: Evaluating next generation sequencing alignment data
By Jit 2832 days agoqualimap.bioinfo.cipf.es - Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like...WALK-IN-INTERVIEW for the post of JRF and Project Assistant @ CIFT
Eligible candidates are invited to attend a walk-in-Interview with all relevant documents for the following positions of Project Fellows (on contractual basis) to work in the Project “ Genetic Diversity of Clostridium botulinum in seafood and...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By BioJoker 2629 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...WALK-IN-INTERVIEW FOR PROJECT ASSISTANT @ BHARATHIDASAN UNIVERSITY
BHARATHIDASAN UNIVERSITY DEPARTMENT OF BIOINFORMATICS, SCHOOL OF LIFE SCIENCES, TIRUCHIRAPPALLI – 620024 Project title: “Genome-scale metabolic modeling and simulation of rumen methanogens An in silico attempt to methane attenuation” Funding...Understanding your reads and mapping !
By Neel 2327 days agobioinformatics-core-shared-training.github.io - One of the best tutorial for beginners ... https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html
