Jit
Enthusiast computational biologist with business dream !!!
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Molecular and Computational Biology Research School
The ambition of the Molecular and Computational Biology Research School (MCB) is to create an attractive and stimulating training environment for PhD students in molecular and computational biology, both to better serve the needs for relevant...Finishing !!
By Jit 2745 days agowww.cbcb.umd.edu - The process of finishing a genome and moving it from a draft stage (the result of sequencing and initial assembly) to a complete genome is typically a time and resource intensive task. The advent of new sequencing technologies...Murray Cox's Genomicus Lab
This group interested in modeling genome dynamics in following topics: ---how genetic variation is distributed within and between individuals, ---determining how this diversity changes over evolutionary time. Hence, Cox group work at the...PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
By Jit 2550 days agohttps://plast.inria.fr/ - PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture,...04- Informatics Approach to Cancer - Interview with Dr. Joel Saltz
By Shreya Ganguli 4066 days agoFor additional information visit http://www.cancerquest.org/joel-saltz-interview. Dr. Joel Saltz is a Professor in the Departments of Pathology, Biostatistics and Bioinformatics, and Mathematics and Computer Science at Emory University. Dr. Saltz's...MIX: Combining multiple assemblies from NGS data
By Rahul Nayak 2392 days agogithub.com - Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices...Evolution and Cancer
By Shikha Logwani 4076 days agoAir date: Wednesday, January 04, 2012, 3:00:00 PM Time displayed is Eastern Time, Washington DC Local Category: Wednesday Afternoon Lectures Description: There is a broad consensus that cancer is the result of somatic cells having serially...HALC: High throughput algorithm for long read error correction
By Jit 2361 days ago Comments (1)github.com - HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from the same species with a relatively low identity requirement so that a long read region can be aligned to at least one contig...Pre- or postdoctoral research fellowship in Structural Bioinformatics in Padova
University of Padova (URL: http://protein.bio.unipd.it/) A research fellowship is available at the BioComputing Laboratory, University of Padova (URL: http://protein.bio.unipd.it/). A highly motivated and creative candidate is sought to work on...nanofilt: Filtering and trimming of long read sequencing data
By Jit 2309 days ago Comments (1)github.com - Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...
