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Bioinformatics opening at ICGEB NEW DELHI
ICGEB NEW DELHI Applications are invited for: Junior Research Fellow, in a DBT funded project, is available in Translational Health Group, ICGEB, New Delhi Qualifications: Education: M.Sc. (preferably in Biotechnology, Life Sciences or...LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
By Rahul Nayak 2309 days agogithub.com - LR_Gapcloser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA database ) or be your own data. Then they are fragmented and aligned to scaffolds...SNPGenie
By Jit 3450 days agogithub.com - SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generation sequencing (NGS) single-nucleotide polymorphism (SNP) variant data. SNP reports (acceptable in a variety of formats) much each correspond to a...Genome assembly tutorial "Genome Assembly for short and long reads"
By Jit 2790 days ago Comments (1)bioinformaticsdotca.github.io - In this lab we will perform de novo genome assembly of a bacterial genome. You will be guided through the genome assembly starting with data quality control, through to building contigs and analysis of the results. At the end of the lab you will...WGS Celera Assembler version 8.3rc2
By Jit 3440 days agowgs-assembler.sourceforge.net - These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version of the software. The distribution is usable on most Unix-like platforms,...Genome assembly forensics: finding the elusive mis-assembly
By Jit 2783 days agoamos.sourceforge.net - We present the first collection of tools aimed at automated genome assembly validation. This work formalizes several mechanisms for detecting mis-assemblies, and describes their implementation in our automated validation pipeline,...ChromHMM: Chromatin state discovery and characterization
By Abhimanyu Singh 3431 days agocompbio.mit.edu - ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial...StringTie Transcript assembly and quantification for RNA-Seq
By Jit 2284 days agoccb.jhu.edu - StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length...Ten International Scholarships for Indian Biotechnology and Bioinformatics Students
By Priya Singh 3410 days ago Comments (10)10 International Scholarships for Indian Students3D de novo assembly (3D DNA) pipeline
By Jit 2411 days agogithub.com - For a detailed description of the pipeline and how it integrates with other tools designed by the Aiden Lab see Genome Assembly Cookbook on http://aidenlab.org/assembly. For the original version of the pipeline and to reproduce the...
