Jit
Enthusiast computational biologist with business dream !!!
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jobTree based python wrapper to run the genome simulation tool suite Evolver
By Jit 3014 days agogithub.com - evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC also automatically creates statistical summaries of the simulation...Chang lab
The Chang lab is focused on how the activities of hundreds or even thousands of genes (gene parties) are coordinated to achieve biological meaning. We have pioneered methods to predict, dissect, and control large-scale gene regulatory programs;...Magic-BLAST: a tool for mapping large next-generation RNA or DNA sequencing runs against a whole...
By Jit 2995 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...Genetics for Fun and Profit: Andrew Hessel at TEDxVilnius
By Jit 4573 days agoAndrew Hessel co-chairs the Bioinformatics and Biotechnology track at the Singularity University, an institution founded by futurist Ray Kurzweil and X Prize Foundation CEO Peter Diamandis, with sponsorship from world-leading organizations that...Carefully opt for human reference genome
By biogeek 2212 days agolh3.github.io - Heng Li posted several issues with the human reference genomes given in these resources and suggests the following compressed FASTA file to be used as hg38/GRCh38 human reference genome. if you map reads to GRCh38 or hg38, use the...PostDocs positions in computer science in HELSINKI, FINLAND
Several university departments in the Helsinki region, Finland, are looking for postdoctoral researchers in the field of computer science and information technology. Jobs are available at: · Helsinki Institute for Information Technology HIIT,...Circlator: automated circularization of genome assemblies using long sequencing reads
By Poonam Mahapatra 2856 days agosanger-pathogens.github.io - A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript. Citation: "Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Biology...CPCRI Kasaragod Bioinformatics PA
CENTRAL PLANTATION CROPS RESEARCH INSTITUTE (Indian Council of Agricultural Research) KASARAGOD -671 124, KERALA WALK-IN-INTERVIEW Walk-in-test cum interview for selection to the following temporary assignments sanctioned under the DBT...
Download blasr 1.3 version
By Jit 2825 days agoDOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error: fail to open file './temporarySam' [bwa_aln_core] write to the...La Trobe University, Melbourne, Australia
La Trobe University, Melbourne, Australia An exciting opportunity exists for a highly motivated and enthusiastic bioinformatics researcher to work in the Exosome, Secretome and Systems Biology laboratory of Dr Suresh Mathivanan. This position is...
