www.mrc-lmb.cam.ac.uk - This is about how to use a computer to find what is known about a gene of interest and also how to get new insights about it.
The tutorial is divided in three main parts:
In the Sequence part, you will see how to look efficiently for a...
www.homolog.us - Useful bioinformatics tutorial, such as
De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)NGS Genome and RNAseq Assembly - a Hands on...
milkweedgenome.org - Some of the useful bioinformatics scripts.
For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly.
http://milkweedgenome.org/?q=scripts
R is a functional based language, the inputs to a function, including options, are in brackets. Note that all dat and options are separated by a comma
Function(data, options)
Even quit is a function
q()
So is...
www.tutorialspoint.com - Online coding group for most of the programming languages.
Code in almost all popular languages using Coding Ground. Edit, compile, execute and share your projects, 100% cloud.
http://www.tutorialspoint.com/codingground.htm
Perl has a ton of command line switches (see perldoc perlrun), but I'm just going to cover the ones you'll commonly need to debug code. The most important switch is -e, for execute (or maybe "engage" :) ). The -e switch takes a quoted string of Perl...
Solved with perl http://rosalind.info/problems/1a/
#Find the most frequent k-mers in a string.#Given: A DNA string Text and an integer k.#Return: All most frequent k-mers in Text (in any order).use strict;use warnings;my...
The question at http://rosalind.info/problems/1d/
Script are moved to http://bioinformaticsonline.com/snippets/view/34633/clump-finding-problem-solved-with-perl