Jit
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Shouji: a fast and efficient pre-alignment filter for sequence alignment
By Jit 1872 days agogithub.com - The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explore the use of hardware/software co-design and hardware acceleration...Krona
By Jit 2829 days agogithub.com - Krona allows hierarchical data to be explored with zooming, multi-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which includes support for several bioinformatics tools and raw data formats. The interactive...Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 1462 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...TMAP - torrent mapping alignment program General Notes
By Poonam Mahapatra 2818 days agogithub.com - TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing technologies. The latest TMAP is unsupported. To use a...Seal: SEquence ALignment evaluation suite
By Jit 2542 days agocompbio.case.edu - Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. This software (implemented in Java) provides several utilities that can be used to evaluate alignment algorithms, including: Reading a pre-existing reference...WGS Celera Assembler version 8.3rc2
By Jit 2810 days agowgs-assembler.sourceforge.net - These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version of the software. The distribution is usable on most Unix-like platforms,...Selecting between Python 2 and Python 3?
Started by Rahul Agarwal 4179 days ago Replies (1) Last reply by Jitendra Narayan 4179 days agoWhich version is best for bioinformatician to work on?Metagenomics assembly workshop !!
By Jit 2802 days agodenbi-metagenomics-workshop.readthedocs.io - Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical steps of metagenome assembly and binning. The Tutorial Data Set FastQC Quality Control Assembly Velvet Assembly MEGAHIT...Research Fellow
UNIVERSITY OF CALCUTTA A walk-in-interview will be held on 15.7.2013 at 12 noon in the Department of Biophysics, Molecular Biology and Bioinformatics, 92 A.P.C Road, Kolkata-700 009 to select one trainee research fellow and two students under...List of GOI approved peer reviewed bioinformatics and computational biology journals
By Jit 2795 days ago Comments (1)Following are the list of Government of India validated and peer reviewed bioinformatics and computational biology journals:
