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rHAT: a seed-and-extension-based noisy long read alignment tool
By Abhimanyu Singh 2726 days agogithub.com - rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT)...sequenceserver
By Jit 3288 days agogithub.com - SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for use locally or over the web. More at http://sequenceserver.com.Shouji: a fast and efficient pre-alignment filter for sequence alignment
By Jit 2319 days agogithub.com - The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explore the use of hardware/software co-design and hardware acceleration...Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 1909 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...Mulan: MUltiple sequence Local AligNment and conservation visualization tool
By Rahul Nayak 3156 days agomulan.dcode.org - Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It...LoRDEC: a hybrid error correction program for long, PacBio reads
By Jit 3257 days agowww.atgc-montpellier.fr - LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read...Five unique traits of effective computational biologist
By Jitendra Narayan 4626 days ago Comments (3)Traits of biological programmersRA Bioinformatics at JNU, New Delhi, INDIA
School of Computational & Integrative Sciences Jawaharlal Nehru University New Delhi-110067, INDIA Date: April 24th. 2017 Last Date: May 6th 2017 PROJECT ID: 632 The following posts are urgently required to be filled for the Department...The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @...
