Jit
Enthusiast computational biologist with business dream !!!
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Magic-BLAST: a tool for mapping large next-generation RNA or DNA sequencing runs against a whole...
By Jit 2524 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...Senior Bioinformatics Programmer and SRF at BIOTECH PARK Lucknow
BIOTECH PARK Advt. No. 3 (8)/BP/13 A walk-in-interview will be held in the Biotech Park Office at Sector G, Jankipuram, Kursi Road, Lucknow (U.P.) August 27, 2013 at 11.00 a.m. for the following posts of DBT sponsored project tenable at...Carefully opt for human reference genome
By biogeek 1741 days agolh3.github.io - Heng Li posted several issues with the human reference genomes given in these resources and suggests the following compressed FASTA file to be used as hg38/GRCh38 human reference genome. if you map reads to GRCh38 or hg38, use the...A Brief Introduction to Genetics
By Jitendra Narayan 4106 days agoA Brief Introduction to Genetics is a short documentary film that explores the history of genetics & genomics and the underlying concepts that provide the foundational knowledge that today's research is built upon. The film describes the history of...Circlator: automated circularization of genome assemblies using long sequencing reads
By Poonam Mahapatra 2385 days agosanger-pathogens.github.io - A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript. Citation: "Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Biology...Tijana Milenkovic Lab
Complex networks and network mining: developing graph theoretic, mathematical, and computational algorithms for efficient extraction of function from topology of complex real-world networks, such as biological, social, and technological...
Download blasr 1.3 version
By Jit 2354 days agoDOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error: fail to open file './temporarySam' [bwa_aln_core] write to the...NCBI PSI-BLAST Tutorial
By Jitendra Narayan 4098 days agohttp:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are...JRF @ BHARATHIDASAN UNIVERSITY
Department of Bioinformatics School of Life Sciences BHARATHIDASAN UNIVERSITY, TIRUCHIRAPPALLI-620 024 WALK-IN-INTERVIEW FOR JUNIOR RESEARCH FELLOWSHIP Project title: Structural and Functional Evolution of Bacterial ADP-ribosylation...P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
By BioStar 2270 days agowww.fishbrowser.org - P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Illumina Paired-end RNA-sequencing reads from target speciesies. Our method provides...
