Jit
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COSMIC
By Jit 3006 days agocancer.sanger.ac.uk - The accurate description and annotation of structural variants can be complex. This is due to the different resolution that variants are reported from traditional cytogenetic coordinates down to the actual base pair positions....Entrez Direct: E-utilities on the UNIX Command Line
By Anjana 2989 days agowww.ncbi.nlm.nih.gov - Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line...IMPUTE2
By Jit 2981 days agomathgen.stats.ox.ac.uk - IMPUTE2 is a computer program for phasing observed genotypes and imputing missing genotypes. Most people use just a couple of the program's basic functions, but we have also built up a collection of specialized and powerful options. If you are...Statistical for biological research
By Neel 2974 days agowww.nature.com - There is no disputing the importance of statistical analysis in biological research, but too often it is considered only after an experiment is completed, when it may be too late. This collection highlights important statistical issues that...DeepVariant : an analysis pipeline that uses a deep neural network to call genetic variants from...
By Jit 1795 days agogithub.com - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation...Comparative genomics educational material and papers bookmarks
By Jit 2967 days ago Comments (5)www.nature.com - Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions...Juicebox: Visualization and analysis software for Hi-C data
By Jit 1769 days agogithub.com - Juicebox is visualization software for Hi-C data. This distribution includes the source code for Juicebox, Juicer Tools, and Assembly Tools. Download Juicebox here, or use Juicebox on the web. Detailed documentation is...Research Officer at National Tea Research Foundation
National Tea Research Foundation (NTRF) a registered body, requires qualified and experienced agricultural research scientist for contractual appointment as per details below : Post Research Officer, NTRF, Kolkata Essential Post Graduate...wgd—simple command line tools for the analysis of ancient whole-genome duplications
By LEGE 1616 days agogithub.com - wgd is a easy to use command-line tool for KS distribution construction named wgd. The wgd suite provides commonly used KS and colinearity analysis workflows together with tools for modeling and visualization, rendering these...
