Archana Malhotra
Computational Biologist
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BlasR Mapping single molecule sequencing reads using Basic Local Alignment with Successive...
By Jit 3061 days agobix.ucsd.edu - BLASR (Basic Local Alignment with Successive Refinement) for mapping Single Molecule Sequencing (SMS) reads that are thousands to tens of thousands of bases long with divergence between the read and genome dominated by insertion and deletion...Assistant Professor - Computational Biology and Bioinformatics in Navi Mumbai
No. ACTREC / ADVT-A/2/2015 Pay in Pay band and Grade Pay : PB-3 (Rs 15,600-39,100) Pay in pay band Rs 21,900+ G.P. of Rs 7,600 Total emoluments = 82,000/- p.m. & nbsp Educational Qualification : Ph.D. or MD/Ph.D. Experience : Post MD /...ReMILO: reference assisted misassembly detection algorithm using short and long reads.
By Jit 3017 days agogithub.com - ReMILO, a reference assisted misassembly detection algorithm that uses both short reads and PacBio SMRT long reads. ReMILO aligns the initial short reads to both the contigs and reference genome, and then constructs a novel data structure called...ArrayGen Next Generation Genome Browser Coming Soon !!!
By ArrayGen Technologies 3963 days agoArrayGen Technologies - www.arraygen.comRainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
By Rahul Nayak 2912 days agosourceforge.net - Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like...SRF/JRF Bioinformatics at CIARI
Realizing the importance of Island Agriculture to meet the requirements of local population and tourists, Indian Council of Agricultural research (ICAR) established Central Island Agricultural Research Institute, Port Blair on June 23rd, 1978 by...FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
By Jit 2446 days agobioinfo.ut.ee - FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the...Post-doc position at LABGeM - Evry, France
The LABGeM team (CEA/Genoscope, CNRS UMR 8030, France, Dir. Claudine Médigue) is developing integrated approaches which combines bioinformatics methods based (i) on genomic and metabolic contexts, (ii) on an orignal metabolic network representation...SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
By Jit 2429 days agogithub.com - This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:Microscope
By Jitendra Narayan 3871 days agomicroscope.readthedocs.org - Microscope Platform user documentation. The MicroScope platform is available at this URL: https://www.genoscope.cns.fr/agc/microscope
