atifrahman.github.io - SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing.
Download
Git repository of SWALO is at...
www.topcoder.com - Learning greedy algo for biologist.
https://www.topcoder.com/community/data-science/data-science-tutorials/greedy-is-good/
This webpage is also useful for the...
github.com - pyScaf orders contigs from genome assemblies utilising several types of information:
paired-end (PE) and/or mate-pair libraries (NGS-based mode)
long reads (NGS-based mode)
synteny to the genome of some related species (reference-based...
Landscape Genomics Postdoc at UBC A research team at the University of British Columbia’s Department of Zoology and Biodiversity Research Centre is seeking a postdoctoral researcher in landscape genetics of native rainbow trout (Oncorhynchus...
neufeldserver.uwaterloo.ca - PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information. If amplification primers were used (e.g., to isolate a variable...
www.iam.u-tokyo.ac.jp - Cgaln (Coarse grained alignment) is a program designed to align a pair of whole genomic sequences of not only bacteria but also entire chromosomes of vertebrates on a nominal desktop computer. Cgaln performs an alignment job in two steps, at the...
BIOSTEC, the 11th International Joint Conference on Biomedical Engineering Systems and Technologies.
Registration to BIOINFORMATICS allows free access to all other BIOSTEC conferences.
Upcoming Deadlines
Regular Paper Submission: July 31,...
As part of the PhD program in Computer Science at University of Essex, I am looking for a PhD student in computational and synthetic biology.
The ideal candidate is interested in designing new biological design automation methods for genome scale...
github.com - maftools - An R package to summarize, analyze and visualize MAF files. Introduction.
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas Project...