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Bioinformatician
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Useful Publications and Websites for Deep Sequencing Data Analysis
Last updated 3984 days ago by Rahul NayakGlobal overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to animal and microbial systems] Sense from sequence reads: methods for...Bandage: interactive visualization of de novo genome assemblies
By Shruti Paniwala 2548 days agorrwick.github.io - Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with connections. Users can zoom in to specific areas of the graph and interact with it by moving nodes,...Rdatamining.com : R and Data Mining
By Poonam Mahapatra 4120 days agowww.rdatamining.com - This website presents examples, documents and resources on data mining with R. Documents on using R for data mining are available to download for non-commercial personal use, including R Reference card for Data Mining, R and Data Mining:...Magic-BLAST: a tool for mapping large next-generation RNA or DNA sequencing runs against a whole...
By Jit 2526 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...-
Most Commonly used Awk by Bioinformatician
Last updated 4116 days ago by Neel Comments (13)Awk is a programming language that is specifically designed for quickly manipulating space delimited data. Although you can achieve all its functionality with Perl, awk is simpler in many practical cases. Why awk? You can replace a pipeline... Carefully opt for human reference genome
By biogeek 1742 days agolh3.github.io - Heng Li posted several issues with the human reference genomes given in these resources and suggests the following compressed FASTA file to be used as hg38/GRCh38 human reference genome. if you map reads to GRCh38 or hg38, use the...PhD at National Institute for Research in Reproductive Health
National Institute for Research in Reproductive Health (Indian Council of Medical Research ) Jehangir Merwanji Street, Parel, Mumbai 400 012 Advertisement No. 1/NIRRH/Ph.D. 2013 Admission to Ph.D. Programme – 2013 National Institute for...Circlator: automated circularization of genome assemblies using long sequencing reads
By Poonam Mahapatra 2386 days agosanger-pathogens.github.io - A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript. Citation: "Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Biology...Baumbach Lab
The Computational Biology research group was established in October 2012 at the Department of Mathematics and Computer Science (IMADA) at the University of Southern Denmark (SDU). It emerged from the Computational Systems Biology group, founded in...
getopts.pl file
By Jit 2355 days agoSSPACE_longread complain for getopts.pl file. To resolve this, download and have in SSPACED-Longreads folder. Cheers :)
